James C. Liao's
Metabolic Engineering Website


lcDNA

lcDNA (Hyduke et al.) is a software program for calculating statistical confidence levels of DNA microarray data based on a Markov Chain Monte Carlo simulation (Tseng et al.).


Current Version: lcDNA_v0.03 - 20 June 2003

lcDNA_users mailing list


Documentation
README - 20 June 2003
CHANGE_LOG - 20 June 2003
BUG_LIST - 20 June 2003
Instruction Manual (v0.03) - 20 June 2003
Tutorial (v0.03) - 20 June 2003
License - 20 June 2003
About - 20 June 2003
16Sept02 cDNA Microarray Short Course  Open Office  PS  PDF

Current Releases

GNU/Linux
lcDNA_v0.03_linux.tar.gz (GLIBC 2.3) - 20 June 2003

Microsoft Windows

lcDNA_v0.03_win.zip - 20 June 2003

References


All Releases

GNU/Linux

lcDNA_v0.03_linux.tar.gz (GLIBC 2.3) - 20 June 2003
lcDNA_v0.03_linux.tar.gz (GLIBC 2.2) - 20 June 2003
lcDNA_v0.03rc1_linux.tar.gz - 02 December 2002
lcDNA_v0.03b2_linux.tar.gz - 02 October 2002
lcDNA_v0.03b1_linux.tar.gz

Microsoft Windows

lcDNA_v0.03_win.zip - 20 June 2003
lcDNA_v0.03rc1_win.zip - 03 December 2002
lcDNA_v0.03b2_win.zip - 03 October 2002
lcDNA_v0.03b1_win.zip
win_lcDNA_v0.02.zip

Source Code

lcDNA_v0.03b1_src.tar.gz

Current Development Snapshots

This contains binaries with changes/fixes that have been requested. Since some of the changes are necessary for lcDNA to be used in certain cases (e.g. large numbers of spots), I need to get them out as soon as possible; however, I do not have the time to fix any bugs (in particular the annoying popup error messages). So these versions may have more strange error messages (please do not report these errors to me). If you do encounter strange results or have other problems with your data please send a message to the mailing list.

These files will unpack to a directory dev_lcDNA. Otherwise there is no apparent difference between the directory structure and that of the release files above.

lcDNA_v0.03 is the most current version.



Fixes


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